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Documentation Contents:

  • Definitions, units, and data types
  • Getting started
  • Adding data
  • Interfacing with Syndirella
  • Preparing files for Fragalysis upload
  • Windows installation
  • Random recipe generation
  • API Reference
    • HIPPO “animal” object
    • Compounds
    • Poses
    • Interactions
    • Reactions
    • Quoting
    • Recipes & Routes
    • Metadata
    • Plotting
    • Fragalysis
    • Database
    • Web
HIPPO
  • API Reference
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API Reference

Contents:

  • HIPPO “animal” object
    • HIPPO
  • Compounds
    • Compound
    • Ingredient
    • CompoundTable: All Compounds
    • CompoundSet: Set of Compounds
    • IngredientSet: Set of Ingredients
  • Poses
    • Pose
    • PoseTable
    • PoseSet
  • Interactions
    • Feature: protein interaction feature
    • Interaction: between atom(s) on a Pose and a Feature
    • InteractionTable: All Interactions
    • InteractionSet: Subset of interactions
  • Reactions
    • Reaction
    • ReactionSet
  • Quoting
    • Quoter
    • Quote
    • Price
  • Recipes & Routes
    • Recipe
    • Route
    • RouteSet
    • RandomRecipeGenerator
  • Metadata
    • MetaData
    • TagTable
    • TagSet
    • Target
  • Plotting
    • add_hippo_logo()
    • add_punchcard_logo()
    • hippo_graph()
    • plot_building_blocks()
    • plot_compound_availability()
    • plot_compound_availability_venn()
    • plot_compound_price()
    • plot_compound_property()
    • plot_interaction_histogram()
    • plot_interaction_punchcard()
    • plot_interaction_punchcard_by_tags()
    • plot_numbers()
    • plot_pose_interactions()
    • plot_pose_property()
    • plot_reactant_amounts()
    • plot_reactant_price()
    • plot_reactants_2d()
    • plot_reaction_funnel()
    • plot_residue_interactions()
    • plot_synthetic_routes()
    • plot_tag_statistics()
  • Fragalysis
    • UnsupportedFragalysisLongcodeError
    • download_target()
    • generate_header()
    • parse_observation_longcode()
  • Database
    • Database
  • Web
    • ProjectPage
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